Do you love indulging in pumpkin desserts as soon as pumpkin season arrives? If so, you're going to love this Healthier Starbucks Copycat Pumpkin Cream Cheese Muffins recipe!

Pumpkin Cream Cheese Muffin
Table of contents
- Pumpkin Cream Cheese Muffin
- Why make this recipe?
- Kickstart Your Healthiest Year Yet with My Free 2026 Meal Planner!
- Ingredients needed and substitutions
- How to Make Copycat Starbucks Pumpkin Cream Cheese Muffins
- Watch the How to Make Pumpkin Cream Cheese Muffins Video Here...
- Expert Tips
- Are you a Weight Watcher ?
- GRAB A COPY OF MY LATEST COOKBOOK ON AMAZON
- Blog Visitors Get Instant Access to The Healthy Muffin Cookbook Today for only $9.97..Just click here for the Digital Download E-Book!
These delicious pumpkin cream cheese muffins are packed with the classic pumpkin spice flavor we all crave, but with a healthy twist.
The sweet cream cheese filling in the center is, without a doubt, the best part of these easy pumpkin muffins. It's one of the best pumpkin muffin recipes you'll find-perfect for a fall breakfast or snack!
ย If you're searching for the best muffins to enjoy this season, this pumpkin cream cheese muffin recipe will quickly become one of your first recipes to make when the fall rolls in.
The creamy, irresistible cream cheese center makes these the best pumpkin muffins around. Whether you're a fan of similar recipes or just love that comforting pumpkin flavor, this easy muffin recipe is sure to be a hit.

Why make this recipe?
You will love making this Healthier Starbucks Copycat Pumpkin Cream Cheese Muffins Recipe because it combines the rich flavors of your favorite pumpkin recipes with a lightened-up twist, making it the perfect guilt-free treat for fall.
Weight Watcher Friendly - These cream cheese pumpkin muffins are only 4 points for one cream cheese-stuffed pumpkin muffin.
Since the new Weight Watchers plan is personalized you will have to input the ingredients used into your WW app to get your exact WW points.
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Ready to make healthy eating easier, more intentional, and way less stressful? I created a FREE 2026 Healthy Meal Planner to help you stay organized, plan nourishing meals, and stay on track with your goals all year long. Inside, you'll find weekly meal planning pages, shopping lists, and simple structure to help you eat well without overthinking it. If you're trying to lose weight, follow WW, get more energy, or simplify your routine, this planner is the perfect fresh start.
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Easy to Make - Preparing these healthy pumpkin muffins requires only a handful simple ingredients and 18-22 minutes of bake time.
Healthier Ingredients: This homemade version uses wholesome ingredients, reducing sugar and calories while still delivering the rich flavors of pumpkin and cream cheese, making it a guilt-free indulgence.
- Cost-Effective: Making these pumpkin cream cheese muffins at home is much more affordable than buying them from Starbucks, allowing you to enjoy your favorite fall treat without breaking the bank.
- Customizable & Fresh: You can control the ingredients to suit your dietary needs, and nothing beats the freshness of a homemade muffin straight out of the oven, with its perfectly creamy center!
If you love easy desserts make sure you check out my most popular recipes - Low Calorie Wendy's Frosty, 3 Ingredient Cinnamon Muffins , Mini DASH Chaffles, Air Fryer Beignets and The WW Zero Point Apple Crisp Chips.
Ingredients needed and substitutions

Whole Wheat Flour was used for this pumpkin cream cheese muffin recipe. Feel free to substitute with any of these other options if you don't have whole wheat flour on hand.
- Almond Flour: A gluten-free option that adds moisture and healthy fats. Combine with another flour to avoid a dense texture.
- Oat Flour: High in fiber and adds a mild, sweet flavor. It's great for keeping the muffins light.
- Coconut Flour: Absorbs more liquid, so use less and add extra moisture like eggs or pumpkin puree.
- Spelt Flour: Offers a nutty flavor and is more digestible while still being high in fiber.
- Buckwheat Flour: For a denser muffin with a unique, earthy flavor. Great for adding protein and fiber.
Pumpkin Puree - Libby's 100% Pure Pumpkin was used for this recipe. Do not use pumpkin pie filling.
Maple Syrup - As a substitute you could swap with honey, agave syrup or date syrup.

How to Make Copycat Starbucks Pumpkin Cream Cheese Muffins
1: Preheat your oven to 350 degrees F. Line a muffin pan with paper liners.

2: Prepare the Cream Cheese Filling - In a small bowl mix softened cream cheese, honey and vanilla extract until smooth and creamy. Set aside in the fridge to keep cool.

3: Prepare the Muffin Batter: Mix together all of the dry ingredients: In a large bowl whisk together, flour, baking soda, baking powder, sea salt and pumpkin pie spice.

4: Mix the wet ingredients: In a separate bowl mix the pumpkin puree, maple syrup, unsweetened applesauce, melted coconut oil, eggs, almond milk and vanilla extract - mix until smooth.

5: Combine the wet and dry ingredients together - stir to combine.

6: Fill your muffin tin - Spoon in your batter, fill each cup โ full.

7: Use a teaspoon to make a slight pocket on the top of the muffin batter where you will add your dollop of cream cheese.

8: Use a spoon or piping bag to add a drop of your prepared cream cheese on top of your muffin batter.

9: Optional - Make a crumble topping for your muffins by mixing pumpkin seeds with honey and cinnamon to sprinkle on top.

10: Bake 18-22 Minutes until golden. Cool on a wire rack and enjoy! The perfect Fall breakfast...

Watch the How to Make Pumpkin Cream Cheese Muffins Video Here...
Expert Tips
- Use warm spices like cinnamon, nutmeg, and cloves to give your muffins that authentic fall flavor. They add depth to the batter and pair beautifully with the pumpkin.
- To avoid dry muffins, add a tablespoon of sour cream to the batter. This helps keep the muffins moist and adds richness to the flavor.
- Make sure to chill the cheesecake filling in the fridge for at least 30 minutes before piping it into the center of the muffins. This ensures it stays firm during baking.
- Line your muffin pan with cupcake liners to prevent the muffins from sticking and for easy removal after baking.
- Store any leftover muffins in an airtight container to maintain freshness. This prevents the muffins from drying out.
- To get that signature cream cheese swirl, pipe a generous amount of cheesecake filling into the center of the muffinand swirl it lightly with a toothpick.
- Add a cinnamon sugar topping just before baking to give the muffin tops a sweet, crunchy texture.
- After baking, let the muffins cool in the pan for 5 minutes before transferring them to a wire rack. This allows the tops of the muffins to firm up without becoming soggy.
- Use a cookie scoop to divide the batter evenly between muffin cups to get consistent muffin sizes and even baking.
- Freeze unbaked muffins in ziplock bags and bake them fresh when needed. Just increase the baking time by a few minutes if baking from frozen.
- To make the muffins ahead, bake and cool them completely, then wrap them tightly in plastic wrap and store them in the freezer for up to 3 months.
- When using canned pumpkin puree, make sure it's not too watery to avoid dry muffins. If necessary, strain the puree to remove excess moisture.
- Bake the muffins at a higher temperature for the first 5 minutes to help the tops of the muffins rise quickly, then reduce the temperature to finish baking.
- Experiment with different ways to fill the muffins. Try layering the cheesecake filling throughout the batter instead of just the center for a more even distribution of cream cheese.
- For an extra fall twist, sprinkle chopped pecans or walnuts on the tops of muffins before baking for added crunch.

Are you a Weight Watcher?
If you follow my Blog you probably already know I am a lifetime member of Weight Watchers and I like to point all of my Recipes with the WW Points System.
This Weight Watchers friendly Pumpkin cream cheese muffin recipe is only 4 Points on my Weight Watchers points app for one delicious copycat Starbucks muffin.
Weight Watchers has a new individualized program right now to make it easier to enjoy the foods you love and still lose weight.
Just plug the ingredients into your WW app to confirm the points for your individual program.

If you want to see the old Purple, Blue and Green WW Food Lists for each plan just click Hereโฆ For a list of the 2025/26 Free WW Food list click here..
Make sure you check out my Newbie WW Tips and Tricks Guide if you are just getting started.
I used to go back and forth between the old Purple Plan and the old Blue Plan prior to the new program and whenever I hit a plateau I did my own 30 Day Low Carb Meal Plan which jumpstarts the Fat Burning again, so if you feel stuck try it!
If you are impatient like me... blog visitors can get instant access to the digital download version today for only $8.97 just click here...
Starbucks Copycat Pumpkin Cream Cheese Muffins
- Total Time: 28 minutes
- Yield: 16 muffins 1x
- Diet: Low Calorie
Description
Do you love indulging in pumpkin desserts as soon as pumpkin season arrives? If so, you're going to love this Healthier Starbucks Copycatย Pumpkin Cream Cheese Muffinsย recipe!
Ingredients
- 1 ยฝ cups of Whole Wheat Flour
- 1 Teaspoon of Baking Soda
- 1 Teaspoon of Baking Powder
- ยฝ Teaspoon of Sea Salt
- ยฝ cup of Unsweetened Applesauce
- 1 ยฝ Teaspoons of Pumpkin Pie Spice
- 1 cup of Pumpkin Puree
- โ cup of Maple Syrup
- ยผ cup of Melted Coconut Oil
- 2 Eggs
- ยผ cup of Unsweetened Almond Milk
- 1 Teaspoon of Vanilla Extract
- Cream Cheese Filling Ingredients - 4 Ounces of Reduced Fat Cream Cheese, 2 Tablespoons of Honey or Maple Syrup and ยฝ Teaspoon of Vanilla Extract
- Optional Pumpkin Seed Topping - ยผ Cup of Chopped Pumpkin Seeds, 1 Teaspoon of Cinnamon and 1 Teaspoon of Honey
Instructions
- Preheat your oven to 350 degrees F. Line a muffin pan with paper liners.
- Prepare the Cream Cheese Filling - In a small bowl mix softened cream cheese, honey and vanilla extract until smooth and creamy. Set aside in the fridge to keep cool.
- Prepare the Muffin Batter: ย Mix together all of the dry ingredients: ย In a large bowl whisk together, flour, baking soda, baking powder, sea salt and pumpkin pie spice.
- Mix the wet ingredients: In a separate bowl mix the pumpkin puree, maple syrup, unsweetened applesauce, melted coconut oil, eggs, almond milk and vanilla extract - mix until smooth.
- Combine the wet and dry ingredients together - stir to combine.
- Fill your muffin tin - Spoon in your batter, fill each cup โ full.
- Use a teaspoon to make a slight pocket on the top of the muffin batter where you will add your dollop of cream cheese.
- Use a spoon or piping bag to add a drop of your prepared cream cheese on top of your muffin batter.
- Optional - Make a crumble topping for your muffins by mixing pumpkin seeds with honey and cinnamon to sprinkle on top.
- Bake 18-22 Minutes until golden. ย Cool on a wire rack and enjoy! The perfect Fall breakfast...
Notes
- Use warm spicesย like cinnamon, nutmeg, and cloves to give your muffins that authentic fall flavor. They add depth to the batter and pair beautifully with the pumpkin.
- To avoidย dry muffins, add a tablespoon ofย sour creamย to the batter. This helps keep the muffins moist and adds richness to the flavor.
- Make sure to chill theย cheesecake fillingย in the fridge for at least 30 minutes before piping it into the center of the muffins. This ensures it stays firm during baking.
- Line your muffin pan withย cupcake linersย to prevent the muffins from sticking and for easy removal after baking.
- Store any leftover muffins in anย airtight containerย to maintain freshness. This prevents the muffins from drying out.
- To get that signature cream cheese swirl, pipe a generous amount of cheesecake filling into theย center of the muffinand swirl it lightly with a toothpick.
- Add aย cinnamon sugarย topping just before baking to give the muffin tops a sweet, crunchy texture.
- After baking, let the muffins cool in the pan for 5 minutes before transferring them to a wire rack. This allows theย tops of the muffinsย to firm up without becoming soggy.
- Use a cookie scoop to divide the batter evenly between muffin cups to get consistent muffin sizes and even baking.
- Freeze unbaked muffins inย ziplock bagsย and bake them fresh when needed. Just increase the baking time by a few minutes if baking from frozen.
- To make the muffins ahead, bake and cool them completely, then wrap them tightly inย plastic wrapย and store them in the freezer for up to 3 months.
- When using canned pumpkin puree, make sure it's not too watery to avoidย dry muffins. If necessary, strain the puree to remove excess moisture.
- Bake the muffins at a higher temperature for the first 5 minutes to help theย tops of the muffinsย rise quickly, then reduce the temperature to finish baking.
- Experiment withย different waysย to fill the muffins. Try layering the cheesecake filling throughout the batter instead of just the center for a more even distribution of cream cheese.
- For an extra fall twist, sprinkle chopped pecans or walnuts on theย tops of muffins before baking for added crunch.
- Prep Time: 10 minutes
- Cook Time: 18 minutes
- Category: Breakfast
- Method: Oven
- Cuisine: American
Nutrition
- Serving Size: 1 muffin
- Calories: 203
- Sugar: 16.4 g
- Sodium: 254.5 mg
- Fat: 8.6 g
- Carbohydrates: 29.2 g
- Protein: 4.9 g
- Cholesterol: 36.1 mg
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